Docking

Software
AutoDock
 - What parameters do you normally use?
 - Saving the results
        BASH commands to split the results files:
        
        grep '^DOCKED' dock.dlg | cut -c9- > dock.pdbqt
                cut -c-66 dock.pdbqt > dock.pdb
                csplit -k -s -n 3 -f dock. dock.pdb '/^ENDMDL/+1' {9}
                - Good explanation of the csplit command
PyMol
Convert filetypes

Docking Servers
MeDock
Docking Server
PatchDock

Commercial Software

FlexX
GOLD
Sybyl

Computational chemistry theory
Molecular modelling
Subpages (1): Molecular Modelling
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